PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G03570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 104aa    MW: 10838.4 Da    PI: 8.1182
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G03570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601185.5e-3713100187
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                      +C aCk+lrrkCa++Cv+apyf+ae+ +++fa++hk+FGasn  kll+++ + +r++++++++yeA+ar+rdPvyG+v++i++lqqq+
  ONIVA03G03570.1  13 PCGACKFLRRKCAAECVFAPYFCAEDgAAQFAAIHKVFGASNAAKLLQQVAPGDRSEVAATVTYEAQARLRDPVYGCVAHIFALQQQV 100
                      7***********************9989***********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.86512104IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-3613100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MASSGVGGVP GSPCGACKFL RRKCAAECVF APYFCAEDGA AQFAAIHKVF GASNAAKLLQ  60
QVAPGDRSEV AATVTYEAQA RLRDPVYGCV AHIFALQQQV ITNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057341e-176AC105734.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050N02, complete sequence.
GenBankAP0149591e-176AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-176CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632118.13e-68PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB74e-48LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0D3FDU96e-71A0A0D3FDU9_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Z2376e-71A0A0D9Z237_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GGU86e-71A0A0E0GGU8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NPQ76e-71A0A0E0NPQ7_ORYRU; Uncharacterized protein
STRINGLOC_Os03g05500.18e-68(Oryza sativa Japonica Group)
STRINGORGLA03G0035800.18e-68(Oryza glaberrima)
STRINGBGIOSGA011866-PA1e-67(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102623344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-43lateral organ boundaries-domain 29